fugue_filter.pl
Written
by Osvaldo Graña, Protein Design Group (CNB-CSIC), January 2001
This program filters data from "Fugue profile lib search" to use it under THREADLIZE:
(" http://www.cnb.uam.es/~pazos/threadlize
" Pazos, Rost & Valencia (1999) Bioinformatics 15(12):1062-1063)
HOW TO USE IT:
First of all, make your request in fuge (http://www-cryst.bioc.cam.ac.uk/~fugue/prfsearch.html),
checking the options as it is done
in the example and using
your email account to get results.
Once you get your results within an email from fugue server (read
in the web page what options you have to
check in the fugue cgi), save the email content in a ".txt" file
(for example "1aaf.txt") and filter it
as follows:
fugue_filter.pl 1aaf.txt > results
"results" will contain filtered data, it can be used as an input for THREADLIZE:
threadlize results &
LICENSE TERMS:
This program is free licensed for academic and non-profit users. Private users, please, contact Osvaldo Graña (osvaldog@cnb.uam.es).
Please, do not modify the code.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY.
Osvaldo Graña
Protein Design Group (CNB-CSIC)
Campus Universidad Autonoma.
Cantoblanco. 28049 Madrid.
Tlf: +34-91-5854570. Fax: +34-91-5854506.
